How to Search miRNA Targets in CSB Lab's PMMLID Database

Developed by Dr. Jit Mukherjee and Dr. Moumita Roy Chowdhury

Creation Date: Dec 31, 2025
Created By: Jit Mukherjee

# PMMLID | CSB Lab

1. This shows the main title page. If you click on the PMMLID, it shows the tutorial and project details

This shows the main title page. If you click on the PMMLID, it shows the tutorial and project details

2. Provide miR Family Names - It is the main search frame.

Provide miR Family Names - It is the main search frame.

3. This is the main search query. Provide only numbers. E.g. - the search query for getting ath-miR171a-3p should be 171.

This is the main search query. Provide only numbers.  E.g. - the search query for getting ath-miR171a-3p should be 171.

4. Select any Viridiplatae Family from the drop down. Here Brassicacea is chosen. If you don't select all the familys are considered.

Select any Viridiplatae Family from the drop down. Here Brassicacea is chosen. If you don't select all the familys are considered.

5. Select a Plant of a selected family. Here Arabidopsis thaliana of Brassicacea is chosen. (If you dont select a plant an error will be generated.)

Select a Plant of a selected family. Here Arabidopsis thaliana of Brassicacea is chosen. (If you dont select a plant an error will be generated.)

6. Click on Plants for outcome. If you click on Human, it provides cross-kingdom outcome.

Click on Plants for outcome. If you click on Human, it provides cross-kingdom outcome.

7. A paginated result will be generated. Here for the above query one miRNA results can be observed. Here the red box shows the miRNA name.

A paginated result will be generated. Here for the above query one miRNA results can be observed. Here the red box shows the miRNA name.

8. Resultant miRNA Sequence can be seen. Three target proteins can also be observed.

Resultant miRNA Sequence can be seen. Three target proteins can also be observed.

9. The corresponding Target Protein will be shown here. If you click on the name of the Target Protein, its details will be provided as Target Protein Text.

The corresponding Target Protein will be shown here. If you click on the name of the Target Protein, its details will be provided as Target Protein Text.

10. The Mode of Inhibition results are shown in the next column.

The Mode of Inhibition results are shown in the next column.

11. The Next column has the GO (Gene Ontology) Information. Clicking on the view details will show the GO information in a pop-up overlay.

The Next column has the GO (Gene Ontology) Information. Clicking on the view details will show the GO information in a pop-up overlay.

12. A sample GO information

A sample GO information

13. Click on the cross to get back to the results for pop-up GO information.

Click on the cross to get back to the results for pop-up GO information.

14. Only one outcome is here. Hence, pagination shows only one page.

Only one outcome is here. Hence, pagination shows only one page.

15. Click on Search to get back to the search

Click on Search to get back to the search

16. Click on Humans for Cross-kingdom results.

Click on Humans for Cross-kingdom results.

17. This shows pagination. The first page is shown first. Clicking on the other buttons shows results in other pages. In one page, three results grouped by miRNA name is shown. Next and Previous Buttons shows the corresponding next and previous pages.

This shows pagination. The first page is shown first. Clicking on the other buttons shows results in other pages. In one page, three results grouped by miRNA name is shown. Next and Previous Buttons shows the corresponding next and previous pages.